Rosalind_20080729_2_Chris5_R3.csfasta.ma.50.3





 28883016 total beads found


Total Beads

     0 mismatches  5972720 ( 20.68%)	
     1 mismatches  3087040 ( 10.69%)	  9059760 ( 31.37%)
     2 mismatches  2201157 (  7.62%)	 11260917 ( 38.99%)
     3 mismatches  1696378 (  5.87%)	 12957295 ( 44.86%)




Uniquely Placed Beads

     0 mismatches  5506882 ( 19.07%)	
     1 mismatches  2849450 (  9.87%)	  8356332 ( 28.93%)
     2 mismatches  2038588 (  7.06%)	 10394920 ( 35.99%)
     3 mismatches  1572175 (  5.44%)	 11967095 ( 41.43%)






Errors within Uniquely Placed Tags 

 Total Errors      11643151

 Single Errors     10279043 (88.28% of Total) 

 Adjacent Errors     682054 (11.72% of Total) 

   Valid             288151 (4.95% of Total) (42.25% of Adjacent Errors) 

   Invalid           393792 (6.76% of Total) (57.74% of Adjacent Errors) 







Starting Points within Randomly and Uniquely Placed Tags

 Number of Starting Points                  5434311 (57.98%) 

 Average Number of Reads per Start Point       2.38







Coverage of Uniquely Placed Tags

 MegaBases of Coverage        598.4

 Coverage Per Base              Avg   (SD)

       A                      133.31 (76.11)

       T                      134.15 (76.33)

       C                      122.04 (71.26)

       G                      121.56 (71.75)

     Total                    127.67 (74.11)

 Bases Not Covered            336896(7.19%)





Coverage of Uniquely and Randomly Placed Tags

  MegaBases of Coverage        647.9

 Coverage Per Base              Avg   (SD)

       A                      144.29 (68.78)

       T                      145.20 (68.95)

       C                      131.85 (64.98)

       G                      132.01 (65.23)

     Total                    138.24 (67.29)

 Bases Not Covered            1892(0.04%)