Rosalind_20080729_2_Chris5_F3.csfasta.ma.50.3





 28941110 total beads found


Total Beads

     0 mismatches  5152125 ( 17.80%)	
     1 mismatches  2921892 ( 10.10%)	  8074017 ( 27.90%)
     2 mismatches  2202430 (  7.61%)	 10276447 ( 35.51%)
     3 mismatches  1774535 (  6.13%)	 12050982 ( 41.64%)




Uniquely Placed Beads

     0 mismatches  4740814 ( 16.38%)	
     1 mismatches  2694474 (  9.31%)	  7435288 ( 25.69%)
     2 mismatches  2037847 (  7.04%)	  9473135 ( 32.73%)
     3 mismatches  1643138 (  5.68%)	 11116273 ( 38.41%)






Errors within Uniquely Placed Tags 

 Total Errors      11699582

 Single Errors     10366436 (88.61% of Total) 

 Adjacent Errors     666573 (11.39% of Total) 

   Valid             278698 (4.76% of Total) (41.81% of Adjacent Errors) 

   Invalid           387785 (6.63% of Total) (58.18% of Adjacent Errors) 







Starting Points within Randomly and Uniquely Placed Tags

 Number of Starting Points                  4186024 (44.66%) 

 Average Number of Reads per Start Point       2.88







Coverage of Uniquely Placed Tags

 MegaBases of Coverage        555.8

 Coverage Per Base              Avg   (SD)

       A                      119.34 (68.57)

       T                      119.42 (68.55)

       C                      118.81 (67.72)

       G                      116.86 (67.49)

     Total                    118.60 (68.09)

 Bases Not Covered            337418(7.20%)





Coverage of Uniquely and Randomly Placed Tags

  MegaBases of Coverage        602.5

 Coverage Per Base              Avg   (SD)

       A                      129.33 (62.20)

       T                      129.39 (62.20)

       C                      128.52 (61.36)

       G                      127.08 (60.97)

     Total                    128.57 (61.68)

 Bases Not Covered            2377(0.05%)